Information for motif5


Reverse Opposite:

p-value:1e-16
log p-value:-3.756e+01
Information Content per bp:1.613
Number of Target Sequences with motif1400.0
Percentage of Target Sequences with motif17.10%
Number of Background Sequences with motif2439.4
Percentage of Background Sequences with motif13.83%
Average Position of motif in Targets479.2 +/- 454.8bp
Average Position of motif in Background472.4 +/- 444.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CTGGGCGACA-
SCCTAGCAACAG

MA0510.1_RFX5/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CTGGGCGACA--
CTCCCTGGCAACAGC

PB0158.1_Rfx3_2/Jaspar

Match Rank:3
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------CTGGGCGACA------
ACTGACCCTTGGTTACCACAAAG

MA0509.1_Rfx1/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CTGGGCGACA
GTTGCCATGGCAAC-

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTGGGCGACA--
TACCCTAGTTACCGA

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTGGGCGACA----
CTACTTGGATACGGAAT

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTGGGCGACA--
TACCATAGCAACGGT

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------CTGGGCGACA------
TGTGACCCTTAGCAACCGATTAA

MA0600.1_RFX2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CTGGGCGACA----
GTTGCCATGGCAACCGCGG

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTGGGCGACA
TTGCCATGGCAACN