Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 8188)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 17643)	% of Background Sequences with Motif
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-9.569e+00	0.0172	3503.0	42.78%	7180.7	40.70%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-3	-8.182e+00	0.0344	79.0	0.96%	112.2	0.64%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-7.115e+00	0.0667	1403.0	17.13%	2795.9	15.85%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-6.896e+00	0.0667	3580.0	43.72%	7414.9	42.03%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-6.866e+00	0.0667	3671.0	44.83%	7610.7	43.14%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-6.700e+00	0.0667	444.0	5.42%	828.3	4.69%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-6.507e+00	0.0667	899.0	10.98%	1760.7	9.98%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-6.435e+00	0.0667	3584.0	43.77%	7436.3	42.15%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-5.557e+00	0.1055	2689.0	32.84%	5550.2	31.46%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-5.412e+00	0.1098	919.0	11.22%	1822.1	10.33%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-5.195e+00	0.1239	1215.0	14.84%	2444.0	13.85%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.164e+00	0.1239	2271.0	27.73%	4673.7	26.49%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.030e+00	0.1239	232.0	2.83%	423.7	2.40%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-4.804e+00	0.1440	1626.0	19.86%	3318.8	18.81%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-4.740e+00	0.1440	858.0	10.48%	1709.6	9.69%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-4.561e+00	0.1606	248.0	3.03%	460.8	2.61%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-4.527e+00	0.1606	1331.0	16.25%	2704.5	15.33%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.370e+00	0.1729	1281.0	15.64%	2603.9	14.76%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.345e+00	0.1729	2272.0	27.74%	4701.3	26.65%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-4.264e+00	0.1730	3130.0	38.22%	6535.4	37.04%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-1	-4.247e+00	0.1730	1027.0	12.54%	2073.8	11.75%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-4.165e+00	0.1737	2675.0	32.67%	5566.6	31.55%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-4.064e+00	0.1838	612.0	7.47%	1212.6	6.87%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-4.031e+00	0.1838	222.0	2.71%	415.0	2.35%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.904e+00	0.1984	1807.0	22.07%	3728.8	21.13%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-3.878e+00	0.1984	279.0	3.41%	531.5	3.01%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.854e+00	0.1984	166.0	2.03%	304.5	1.73%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.768e+00	0.2029	531.0	6.48%	1050.5	5.95%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.681e+00	0.2137	147.0	1.80%	268.4	1.52%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.394e+00	0.2752	1237.0	15.11%	2538.8	14.39%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.335e+00	0.2827	59.0	0.72%	99.8	0.57%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.040e+00	0.3678	2985.0	36.45%	6274.3	35.56%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-2.986e+00	0.3762	1795.0	21.92%	3736.0	21.18%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.940e+00	0.3826	417.0	5.09%	830.2	4.71%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.891e+00	0.3903	170.0	2.08%	323.5	1.83%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.810e+00	0.4113	198.0	2.42%	381.0	2.16%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-1	-2.725e+00	0.4357	106.0	1.29%	196.4	1.11%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.702e+00	0.4357	640.0	7.82%	1301.1	7.37%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.655e+00	0.4435	586.0	7.16%	1189.6	6.74%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.627e+00	0.4446	2094.0	25.57%	4387.5	24.87%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.543e+00	0.4719	1014.0	12.38%	2094.8	11.87%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.483e+00	0.4888	1882.0	22.98%	3941.9	22.34%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.475e+00	0.4888	31.0	0.38%	51.2	0.29%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-2.431e+00	0.4917	166.0	2.03%	321.8	1.82%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-1	-2.388e+00	0.5018	272.0	3.32%	540.9	3.07%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.333e+00	0.5188	4196.0	51.24%	8912.1	50.51%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-2.182e+00	0.5903	189.0	2.31%	372.9	2.11%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.162e+00	0.5903	1979.0	24.17%	4163.8	23.60%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.155e+00	0.5903	1008.0	12.31%	2095.3	11.88%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.151e+00	0.5903	370.0	4.52%	749.8	4.25%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.074e+00	0.6063	2314.0	28.26%	4884.7	27.69%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.070e+00	0.6063	1636.0	19.98%	3435.1	19.47%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.069e+00	0.6063	1103.0	13.47%	2300.4	13.04%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.056e+00	0.6063	229.0	2.80%	457.8	2.59%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.050e+00	0.6063	2767.0	33.79%	5856.4	33.19%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.037e+00	0.6063	80.0	0.98%	151.3	0.86%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.971e+00	0.6063	735.0	8.98%	1523.4	8.63%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.953e+00	0.6063	393.0	4.80%	802.7	4.55%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.908e+00	0.6185	1391.0	16.99%	2920.9	16.56%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.886e+00	0.6216	386.0	4.71%	789.7	4.48%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.882e+00	0.6216	480.0	5.86%	987.9	5.60%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.823e+00	0.6409	211.0	2.58%	424.5	2.41%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.791e+00	0.6513	1183.0	14.45%	2482.0	14.07%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.779e+00	0.6513	1232.0	15.04%	2587.3	14.66%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.757e+00	0.6529	1217.0	14.86%	2556.9	14.49%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.740e+00	0.6541	1735.0	21.19%	3663.4	20.76%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.697e+00	0.6731	4289.0	52.38%	9151.4	51.87%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.692e+00	0.6731	237.0	2.89%	481.7	2.73%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.657e+00	0.6800	2149.0	26.24%	4554.2	25.81%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.617e+00	0.6973	480.0	5.86%	995.9	5.64%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.592e+00	0.7051	147.0	1.80%	295.9	1.68%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.590e+00	0.7051	340.0	4.15%	700.7	3.97%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-1.508e+00	0.7459	3768.0	46.01%	8042.2	45.58%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.484e+00	0.7538	190.0	2.32%	387.9	2.20%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.468e+00	0.7555	642.0	7.84%	1344.3	7.62%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.464e+00	0.7555	569.0	6.95%	1189.9	6.74%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.446e+00	0.7555	889.0	10.86%	1872.0	10.61%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.390e+00	0.7853	264.0	3.22%	545.2	3.09%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.334e+00	0.8200	499.0	6.09%	1045.0	5.92%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.322e+00	0.8200	890.0	10.87%	1879.3	10.65%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.285e+00	0.8406	2850.0	34.80%	6084.6	34.49%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.276e+00	0.8406	193.0	2.36%	398.7	2.26%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.258e+00	0.8422	414.0	5.06%	867.2	4.92%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.215e+00	0.8692	1800.0	21.98%	3834.3	21.73%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.197e+00	0.8740	2423.0	29.59%	5173.7	29.32%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.195e+00	0.8740	277.0	3.38%	578.2	3.28%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.194e+00	0.8740	1556.0	19.00%	3312.2	18.77%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.189e+00	0.8740	2533.0	30.93%	5410.4	30.67%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.167e+00	0.8740	1005.0	12.27%	2133.7	12.09%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.104e+00	0.9060	867.0	10.59%	1841.1	10.44%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.091e+00	0.9077	791.0	9.66%	1679.5	9.52%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.091e+00	0.9077	705.0	8.61%	1496.0	8.48%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.071e+00	0.9077	1348.0	16.46%	2874.6	16.29%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.049e+00	0.9167	234.0	2.86%	492.0	2.79%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.013e+00	0.9407	2150.0	26.25%	4601.9	26.08%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-9.855e-01	0.9564	709.0	8.66%	1509.5	8.56%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.939e-01	1.0000	1270.0	15.51%	2719.6	15.41%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.794e-01	1.0000	3177.0	38.80%	6823.3	38.67%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.722e-01	1.0000	529.0	6.46%	1129.9	6.40%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.636e-01	1.0000	15.0	0.18%	30.3	0.17%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-8.631e-01	1.0000	388.0	4.74%	827.8	4.69%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.621e-01	1.0000	346.0	4.23%	737.8	4.18%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.394e-01	1.0000	1076.0	13.14%	2306.2	13.07%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.372e-01	1.0000	428.0	5.23%	914.1	5.18%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.132e-01	1.0000	359.0	4.38%	767.7	4.35%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.045e-01	1.0000	733.0	8.95%	1571.6	8.91%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-7.987e-01	1.0000	4194.0	51.22%	9022.1	51.14%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.976e-01	1.0000	830.0	10.14%	1780.1	10.09%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-7.932e-01	1.0000	1489.0	18.18%	3198.5	18.13%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-7.885e-01	1.0000	277.0	3.38%	592.3	3.36%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.765e-01	1.0000	2285.0	27.90%	4913.4	27.85%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.695e-01	1.0000	705.0	8.61%	1513.9	8.58%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.430e-01	1.0000	1741.0	21.26%	3745.4	21.23%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.324e-01	1.0000	3425.0	41.82%	7373.8	41.80%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.293e-01	1.0000	41.0	0.50%	87.1	0.49%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.879e-01	1.0000	1894.0	23.13%	4080.5	23.13%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.867e-01	1.0000	288.0	3.52%	620.6	3.52%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.572e-01	1.0000	817.0	9.98%	1762.2	9.99%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.341e-01	1.0000	260.0	3.17%	562.9	3.19%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.176e-01	1.0000	3955.0	48.30%	8529.7	48.35%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.169e-01	1.0000	193.0	2.36%	418.4	2.37%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.169e-01	1.0000	193.0	2.36%	418.4	2.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-6.076e-01	1.0000	1691.0	20.65%	3651.8	20.70%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.047e-01	1.0000	905.0	11.05%	1956.3	11.09%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.024e-01	1.0000	2290.0	27.96%	4943.4	28.02%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.727e-01	1.0000	31.0	0.38%	68.8	0.39%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-5.649e-01	1.0000	827.0	10.10%	1791.3	10.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.618e-01	1.0000	601.0	7.34%	1303.7	7.39%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.469e-01	1.0000	1036.0	12.65%	2244.3	12.72%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.441e-01	1.0000	318.0	3.88%	692.7	3.93%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.345e-01	1.0000	1016.0	12.41%	2202.7	12.49%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.250e-01	1.0000	1279.0	15.62%	2771.0	15.71%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.195e-01	1.0000	1703.0	20.80%	3687.9	20.90%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.919e-01	1.0000	732.0	8.94%	1592.1	9.02%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-4.866e-01	1.0000	1178.0	14.39%	2557.5	14.50%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.857e-01	1.0000	1314.0	16.05%	2851.6	16.16%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.633e-01	1.0000	424.0	5.18%	927.4	5.26%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.488e-01	1.0000	494.0	6.03%	1080.5	6.12%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.440e-01	1.0000	2776.0	33.90%	6013.2	34.08%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.145e-01	1.0000	207.0	2.53%	458.1	2.60%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.967e-01	1.0000	1047.0	12.79%	2284.7	12.95%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.721e-01	1.0000	65.0	0.79%	148.1	0.84%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.583e-01	1.0000	2376.0	29.01%	5164.9	29.27%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.531e-01	1.0000	2690.0	32.85%	5844.0	33.12%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.373e-01	1.0000	4597.0	56.14%	9957.4	56.44%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.248e-01	1.0000	2562.0	31.29%	5572.6	31.59%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.244e-01	1.0000	1377.0	16.82%	3009.5	17.06%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.195e-01	1.0000	285.0	3.48%	635.9	3.60%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-3.111e-01	1.0000	1412.0	17.24%	3087.9	17.50%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.938e-01	1.0000	2121.0	25.90%	4625.8	26.22%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.896e-01	1.0000	168.0	2.05%	380.6	2.16%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.835e-01	1.0000	285.0	3.48%	638.6	3.62%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.808e-01	1.0000	3757.0	45.88%	8160.4	46.25%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.726e-01	1.0000	805.0	9.83%	1775.3	10.06%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.668e-01	1.0000	2810.0	34.31%	6120.8	34.69%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.650e-01	1.0000	485.0	5.92%	1079.0	6.12%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.555e-01	1.0000	2139.0	26.12%	4672.3	26.48%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.465e-01	1.0000	1420.0	17.34%	3116.6	17.67%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.432e-01	1.0000	994.0	12.14%	2191.9	12.42%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-2.429e-01	1.0000	171.0	2.09%	390.9	2.22%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.418e-01	1.0000	4480.0	54.71%	9727.8	55.14%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.293e-01	1.0000	441.0	5.39%	986.9	5.59%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.220e-01	1.0000	1137.0	13.88%	2506.6	14.21%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.071e-01	1.0000	587.0	7.17%	1309.8	7.42%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.003e-01	1.0000	457.0	5.58%	1025.8	5.81%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.972e-01	1.0000	235.0	2.87%	536.5	3.04%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.904e-01	1.0000	1033.0	12.61%	2286.4	12.96%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.873e-01	1.0000	2151.0	26.27%	4715.9	26.73%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.743e-01	1.0000	2509.0	30.64%	5494.2	31.14%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.735e-01	1.0000	2765.0	33.76%	6048.4	34.28%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.713e-01	1.0000	4271.0	52.16%	9298.3	52.70%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.673e-01	1.0000	740.0	9.04%	1651.0	9.36%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.610e-01	1.0000	1359.0	16.60%	3003.6	17.02%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.602e-01	1.0000	1778.0	21.71%	3914.1	22.19%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.598e-01	1.0000	2414.0	29.48%	5293.7	30.00%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.550e-01	1.0000	1595.0	19.48%	3518.3	19.94%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.533e-01	1.0000	916.0	11.19%	2039.1	11.56%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.494e-01	1.0000	3104.0	37.90%	6789.2	38.48%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.483e-01	1.0000	308.0	3.76%	704.7	3.99%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.478e-01	1.0000	2043.0	24.95%	4493.2	25.47%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.467e-01	1.0000	459.0	5.61%	1038.7	5.89%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.464e-01	1.0000	248.0	3.03%	571.9	3.24%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.414e-01	1.0000	340.0	4.15%	776.4	4.40%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.374e-01	1.0000	470.0	5.74%	1064.4	6.03%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.368e-01	1.0000	450.0	5.50%	1020.2	5.78%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.336e-01	1.0000	1862.0	22.74%	4105.1	23.27%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.283e-01	1.0000	2751.0	33.59%	6034.5	34.20%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.243e-01	1.0000	2845.0	34.74%	6239.0	35.36%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.223e-01	1.0000	191.0	2.33%	447.0	2.53%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.186e-01	1.0000	5170.0	63.13%	11252.0	63.78%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.105e-01	1.0000	1703.0	20.80%	3768.2	21.36%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.082e-01	1.0000	1910.0	23.32%	4219.4	23.92%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.074e-01	1.0000	83.0	1.01%	204.3	1.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-9.381e-02	1.0000	4891.0	59.73%	10664.6	60.45%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-9.314e-02	1.0000	2290.0	27.96%	5051.8	28.63%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.079e-02	1.0000	658.0	8.04%	1490.0	8.45%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.429e-02	1.0000	262.0	3.20%	613.4	3.48%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.177e-02	1.0000	707.0	8.63%	1601.9	9.08%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.891e-02	1.0000	114.0	1.39%	279.1	1.58%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.558e-02	1.0000	3615.0	44.14%	7928.3	44.94%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.834e-02	1.0000	1374.0	16.78%	3070.4	17.40%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-6.754e-02	1.0000	633.0	7.73%	1443.3	8.18%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.656e-02	1.0000	1515.0	18.50%	3379.9	19.16%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.508e-02	1.0000	1359.0	16.60%	3040.0	17.23%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.034e-02	1.0000	875.0	10.69%	1980.4	11.22%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.903e-02	1.0000	1245.0	15.20%	2793.1	15.83%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.709e-02	1.0000	3090.0	37.73%	6807.6	38.59%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-5.663e-02	1.0000	1946.0	23.76%	4325.2	24.52%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.109e-02	1.0000	3151.0	38.48%	6944.9	39.36%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-4.619e-02	1.0000	5835.0	71.25%	12718.1	72.09%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.305e-02	1.0000	1221.0	14.91%	2752.0	15.60%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-3.993e-02	1.0000	21.0	0.26%	64.2	0.36%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.871e-02	1.0000	2177.0	26.58%	4843.5	27.45%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.622e-02	1.0000	2044.0	24.96%	4556.2	25.82%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.615e-02	1.0000	2688.0	32.82%	5956.5	33.76%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.562e-02	1.0000	3037.0	37.09%	6713.8	38.05%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.559e-02	1.0000	319.0	3.90%	757.8	4.30%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.527e-02	1.0000	1143.0	13.96%	2586.4	14.66%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.044e-02	1.0000	3265.0	39.87%	7213.4	40.89%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.768e-02	1.0000	999.0	12.20%	2276.0	12.90%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.659e-02	1.0000	151.0	1.84%	378.6	2.15%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.640e-02	1.0000	897.0	10.95%	2052.1	11.63%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.625e-02	1.0000	2860.0	34.92%	6342.7	35.95%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.547e-02	1.0000	2049.0	25.02%	4580.8	25.96%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.332e-02	1.0000	1690.0	20.64%	3799.5	21.54%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.060e-02	1.0000	502.0	6.13%	1179.4	6.69%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-2.026e-02	1.0000	1879.0	22.95%	4217.7	23.91%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.805e-02	1.0000	475.0	5.80%	1121.2	6.35%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.513e-02	1.0000	1054.0	12.87%	2414.4	13.68%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.414e-02	1.0000	5737.0	70.06%	12553.5	71.15%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.175e-02	1.0000	3541.0	43.24%	7847.1	44.48%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.167e-02	1.0000	1910.0	23.32%	4303.4	24.39%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.087e-02	1.0000	5570.0	68.02%	12206.7	69.19%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.034e-02	1.0000	2762.0	33.73%	6164.6	34.94%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-8.826e-03	1.0000	37.0	0.45%	114.4	0.65%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.211e-03	1.0000	2091.0	25.53%	4714.7	26.72%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.068e-03	1.0000	1109.0	13.54%	2560.0	14.51%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.323e-03	1.0000	2143.0	26.17%	4837.2	27.42%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.638e-03	1.0000	659.0	8.05%	1562.0	8.85%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.583e-03	1.0000	1133.0	13.84%	2619.4	14.85%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.384e-03	1.0000	3545.0	43.29%	7890.4	44.72%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-3.991e-03	1.0000	1790.0	21.86%	4072.8	23.08%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.382e-03	1.0000	3100.0	37.86%	6962.1	39.46%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.209e-03	1.0000	1321.0	16.13%	3067.1	17.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	722.0	8.82%	2874.3	16.29%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	598.0	7.30%	2586.1	14.66%