Information for motif12


Reverse Opposite:

p-value:1e-12
log p-value:-2.809e+01
Information Content per bp:1.894
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets264.9 +/- 242.9bp
Average Position of motif in Background769.6 +/- 137.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TAGTATAGTATA-
TATAATTATAATATTC

PB0069.1_Sox21_1/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TAGTATAGTATA-
TTTAATTATAATTAAG

PB0174.1_Sox30_2/Jaspar

Match Rank:3
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TAGTATAGTATA-
TAAGATTATAATACGG

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---TAGTATAGTATA-
GCTAATTATAATTATC

PB0106.1_Arid5a_2/Jaspar

Match Rank:5
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----TAGTATAGTATA
TNNTTTCGTATTNNANN

MA0032.1_FOXC1/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TAGTATAGTATA
GGTAAGTA-------

MA0040.1_Foxq1/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TAGTATAGTATA--
---TATTGTTTATT

MA0124.1_NKX3-1/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-TAGTATAGTATA
TAAGTAT------

MA0108.2_TBP/Jaspar

Match Rank:9
Score:0.48
Offset:7
Orientation:forward strand
Alignment:TAGTATAGTATA----------
-------GTATAAAAGGCGGGG

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.48
Offset:7
Orientation:forward strand
Alignment:TAGTATAGTATA----------
-------GTATAAAAGGCGGGG