Information for motif18


Reverse Opposite:

p-value:1e-7
log p-value:-1.840e+01
Information Content per bp:1.530
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets510.9 +/- 438.0bp
Average Position of motif in Background646.6 +/- 590.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGTCGATC-
NTATYGATCH

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TGTCGATC--
NCTGTCAATCAN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGTCGATC-
GSCTGTCACTCA

MA0479.1_FOXH1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTCGATC---
TGTGGATTNNN

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCGATC--
NNAATTCTCGNTNAN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTCGATC--
NNTGTGGATTSS

PB0036.1_Irf6_1/Jaspar

Match Rank:7
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------TGTCGATC--
NNNTTGGTTTCGNTNNN

PB0035.1_Irf5_1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGTCGATC---
NTGGTTTCGGTTNNN

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------TGTCGATC-
AAGCACCTGTCAATAT

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------TGTCGATC-
AAAGACCTGTCAATCC