Information for motif2


Reverse Opposite:

p-value:1e-20
log p-value:-4.645e+01
Information Content per bp:1.722
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets467.8 +/- 478.5bp
Average Position of motif in Background307.1 +/- 223.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GACGGGTCTGTC---
GGNGCGNCTGTTNNN

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.65
Offset:6
Orientation:forward strand
Alignment:GACGGGTCTGTC
------GCTGTG

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GACGGGTCTGTC-----
-AAGCACCTGTCAATAT

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GACGGGTCTGTC----
----TGTCTGDCACCT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GACGGGTCTGTC
-VBSYGTCTGG-

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GACGGGTCTGTC----
---CTGTCTGTCACCT

MA0498.1_Meis1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GACGGGTCTGTC--------
-----AGCTGTCACTCACCT

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GACGGGTCTGTC--
----GGTCTGGCAT

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GACGGGTCTGTC
---CTGTCTGG-

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GACGGGTCTGTC-----
-----GSCTGTCACTCA