Information for motif20


Reverse Opposite:

p-value:1e-7
log p-value:-1.754e+01
Information Content per bp:1.984
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets417.6 +/- 307.9bp
Average Position of motif in Background1027.2 +/- 352.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCATCCAGGC-----
SCAGYCADGCATGAC

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCATCCAGGC--
NNNGTAACTANGNNA

PB0158.1_Rfx3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------GCATCCAGGC------
NNTNGNNGTAACCAAGNNNNAGN

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCATCCAGGC
ACATCCTGNT

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCATCCAGGC--
----CTAGGCCT

PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCATCCAGGC------
GCAGCCAAGCGTGACN

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCCAGGC--
NTNNCGTATCCAAGTNN

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCATCCAGGC--
----CNAGGCCT

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCATCCAGGC------
CAAATCCAGACATCACA

PB0077.1_Spdef_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCATCCAGGC----
GTACATCCGGATTTTT