Information for motif24


Reverse Opposite:

p-value:1e-5
log p-value:-1.263e+01
Information Content per bp:1.450
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets516.3 +/- 392.9bp
Average Position of motif in Background557.5 +/- 296.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGAGGACG--
-CAAAGGTCAGA

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGAGGACG
TAGGGCAAAGGTCA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAGAGGACG-
-CAAAGGTCAG

MA0131.1_HINFP/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCAGAGGACG---
---GCGGACGTTN

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCAGAGGACG------
GCCASCAGGGGGCGCYVNNG

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAGAGGACG
-CAGATGGC-

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCAGAGGACG--
--AGAGGAAGTG

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCAGAGGACG-
-AACAGGAAGT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGGACG
AACAGATGGC-

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCAGAGGACG
TGGGGCAAAGGTCA