Information for motif27


Reverse Opposite:

p-value:1e-3
log p-value:-7.695e+00
Information Content per bp:1.543
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets210.9 +/- 154.2bp
Average Position of motif in Background248.7 +/- 118.5bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.91
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0072.1_RORA_2/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GACTGTCCTA------
--TTGACCTANTTATN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GACTGTCCTA
---TGACCT-

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GACTGTCCTA--
--CTGTTCCTGG

MA0071.1_RORA_1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GACTGTCCTA---
---TGACCTTGAT

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GACTGTCCTA--
--CTGACCTTTG

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GACTGTCCTA----
GATAACATCCTAGTAG

MA0160.1_NR4A2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GACTGTCCTA
--GTGACCTT

MA0107.1_RELA/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACTGTCCTA
GGGAATTTCC--

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GACTGTCCTA
NNACTTGCCTT

MA0105.3_NFKB1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GACTGTCCTA
GGGAATTTCCC-