Information for motif28


Reverse Opposite:

p-value:1e-2
log p-value:-6.550e+00
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets522.4 +/- 391.5bp
Average Position of motif in Background448.0 +/- 500.2bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)2.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TACACTCTGG---
---GGTCTGGCAT

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TACACTCTGG
TACTNNNN--

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TACACTCTGG
AGCCACTCAAG

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TACACTCTGG-----
NNTNNTGTCTGGNNTNG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TACACTCTGG
--CTGTCTGG

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TACACTCTGG------
TGGACTTTGNNCTNTG

MA0114.2_HNF4A/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TACACTCTGG----
CTGGACTTTGGACTC

MA0113.2_NR3C1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TACACTCTGG---
AGNACATTNTGTTCT

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TACACTCTGG
NCCACTTAN-

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TACACTCTGG
RSCACTYRAG