Information for motif29


Reverse Opposite:

p-value:1e-2
log p-value:-4.609e+00
Information Content per bp:1.446
Number of Target Sequences with motif345.0
Percentage of Target Sequences with motif4.22%
Number of Background Sequences with motif288.4
Percentage of Background Sequences with motif3.72%
Average Position of motif in Targets480.4 +/- 420.9bp
Average Position of motif in Background522.0 +/- 427.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGGGNRACA
GCTGTG-----

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTGGGNRACA-------
NNCCTGNAAAAAAAAAAAAA

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGGGNRACA
CSTGGGAAAD-

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTGGGNRACA-------
NNCCTGNAAAAAAAAAAAAA

POL002.1_INR/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGGGNRACA
NNNANTGA------

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGGGNRACA---
-TGAGTGACAGSC

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGGGNRACA--
NTGATTGACAGN

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTGGGNRACA
GGTCTGGCAT---

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CTGGGNRACA
RGSMTBCTGGGAAAT-

MA0161.1_NFIC/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGGGNRACA
TTGGCA----