Information for motif33


Reverse Opposite:

p-value:1e-1
log p-value:-2.620e+00
Information Content per bp:1.973
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets381.0 +/- 275.0bp
Average Position of motif in Background521.2 +/- 127.0bp
Strand Bias (log2 ratio + to - strand density)3.9
Multiplicity (# of sites on avg that occur together)2.58
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0045.1_Myb_1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GAACCGTGGT---
ATGGAAACCGTTATTTT

PB0046.1_Mybl1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAACCGTGGT---
TTGAAAACCGTTAATTT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAACCGTGGT---
---CTGTGGTTTN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAACCGTGGT--
--GCTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAACCGTGGT---
-NNHTGTGGTTWN

MA0130.1_ZNF354C/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GAACCGTGGT-
-----GTGGAT

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAACCGTGGT------
NNANTGGTGGTCTTNNN

GFY(?)/Promoter/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAACCGTGGT
GGGAATTGTAGT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAACCGTGGT--
--NNTGTGGTTT

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAACCGTGGT
GAACAATGG-