Information for motif34


Reverse Opposite:

p-value:1e0
log p-value:-2.287e+00
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets335.2 +/- 216.0bp
Average Position of motif in Background1310.4 +/- 57.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCCTTAGTCG
-CCTTTGTT-

MA0132.1_Pdx1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TCCTTAGTCG
-AATTAG---

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TCCTTAGTCG
-CCWTTGTY-

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTAGTCG
BCMATTAG---

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTAGTCG----
NNAATTAGTCACGGT

PB0032.1_IRC900814_1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTAGTCG-----
GNNATTTGTCGTAANN

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TCCTTAGTCG----
ANTCCTTTGTCTNNNN

MA0109.1_Hltf/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCCTTAGTCG
AACCTTATAT-

PH0027.1_Emx2/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----TCCTTAGTCG--
ACCACTAATTAGTGGAC

PH0031.1_Evx1/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----TCCTTAGTCG--
AGAACTAATTAGTGGAC