Information for motif35


Reverse Opposite:

p-value:1e0
log p-value:-2.281e+00
Information Content per bp:1.786
Number of Target Sequences with motif299.0
Percentage of Target Sequences with motif3.65%
Number of Background Sequences with motif263.9
Percentage of Background Sequences with motif3.40%
Average Position of motif in Targets574.6 +/- 528.4bp
Average Position of motif in Background618.5 +/- 466.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GCGTGCAG
TGCGTG---

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGCAG
TTGCGTGCVA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GCGTGCAG
GGACGTGC--

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGCAG-------
NNNANTGCAGTGCNNTT

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCGTGCAG
TACGTGCV-

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCGTGCAG---
GGGCCGTGTGCAAAAA

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GCGTGCAG--
NNGCGTGTGTGCNGCN

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCGTGCAG
GGGTACGTGC--

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGCAG-----
TNTCCTGCTGTGNNG

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGCAG-----
TCNCCTGCTGNGNNN