Information for motif36


Reverse Opposite:

p-value:1e0
log p-value:-2.078e+00
Information Content per bp:1.865
Number of Target Sequences with motif384.0
Percentage of Target Sequences with motif4.69%
Number of Background Sequences with motif343.2
Percentage of Background Sequences with motif4.43%
Average Position of motif in Targets442.9 +/- 444.6bp
Average Position of motif in Background517.4 +/- 410.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTTTGAGAC
NNANTTTTATTGGNNN

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTTTTGAGAC
NNNNTTTTTTTTTNAAC

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------TTTTTTTGAGAC
GNATTTTTTTTTTGANC-

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTTTGAGAC
TTTTTTTTCNNGTN

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTTTGAGAC
NNAATTTTATTGGNTN

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTTTTGAGAC
NTNAATTTTATTGNATT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTTTTTGAGAC
TTTTATTRGN--

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTTTTTTGAGAC
TTTAATTGCN--

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTTTTTTGAGAC
NTTTTATGAC---

PB0186.1_Tcf3_2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTTTGAGAC-
NNTTTNTTTTNGNNN