Information for motif5


Reverse Opposite:

p-value:1e-15
log p-value:-3.644e+01
Information Content per bp:1.735
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets512.4 +/- 470.4bp
Average Position of motif in Background1272.7 +/- 229.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTGTGTAGCACC-
CTGTCTGTCACCT

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTGTGTAGCACC-
-TGTCTGDCACCT

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGTAGCACC
TGGGTGTGGC---

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTGTGTAGCACC
NTGGGTGTGGCC--

MA0493.1_Klf1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGTAGCACC
TGGGTGTGGCN--

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGTGTAGCACC
-NATGTTGCAA-

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GTGTGTAGCACC
GGGCCGTGTGCAAAAA-

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GTGTGTAGCACC
NNGCGTGTGTGCNGCN--

MA0039.2_Klf4/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTGTGTAGCACC
TGGGTGGGGC---

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTGTGTAGCACC
DGGGYGKGGC---