Information for motif6


Reverse Opposite:

p-value:1e-15
log p-value:-3.556e+01
Information Content per bp:1.697
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets546.7 +/- 652.0bp
Average Position of motif in Background510.6 +/- 592.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TATTGACTGTAC
CNTGTTTACATA--

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TATTGACTGTAC
-ATTTCCTGTN-

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TATTGACTGTAC
TGTTTACTTT--

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TATTGACTGTAC
TGTTTACTTT--

MA0047.2_Foxa2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TATTGACTGTAC
TGTTTACTTAGG

MA0148.3_FOXA1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TATTGACTGTAC
TCCATGTTTACTTTG-

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TATTGACTGTAC----
------CTGTTCCTGG

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TATTGACTGTAC
-ATTTCCTGTN-

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TATTGACTGTAC---
NTATTGACAGGTNNTN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TATTGACTGTAC
--TWGTCTGV--