Information for motif9


Reverse Opposite:

p-value:1e-12
log p-value:-2.956e+01
Information Content per bp:1.883
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets515.4 +/- 499.3bp
Average Position of motif in Background966.9 +/- 411.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TAGGTGATGC---
GCGGAGGTGTCGCCTC

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TAGGTGATGC
TGGGTGTGGC

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TAGGTGATGC--
--NATGTTGCAA

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TAGGTGATGC---
---MTGATGCAAT

MA0493.1_Klf1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TAGGTGATGC-
TGGGTGTGGCN

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TAGGTGATGC
CGTGGGTGGTCC

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TAGGTGATGC---
---ATGATGCAAT

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TAGGTGATGC
DGGGYGKGGC

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TAGGTGATGC-
NTGGGTGTGGCC

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TAGGTGATGC------
-AGATGCTRCTRCCHT