Information for motif1


Reverse Opposite:

p-value:1e-14
log p-value:-3.290e+01
Information Content per bp:1.856
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif23.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets241.0 +/- 229.4bp
Average Position of motif in Background495.8 +/- 497.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0592.1_ESRRA/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TCACTAAAGTCA--
---CCAAGGTCACA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TCACTAAAGTCA-
---CAAAGGTCAG

MA0512.1_Rxra/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TCACTAAAGTCA--
---CAAAGGTCAGA

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCACTAAAGTCA----
TCTCAAAGGTCACCTG

MA0160.1_NR4A2/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TCACTAAAGTCA-
-----AAGGTCAC

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCACTAAAGTCA-
CTACCAATAAAATTCT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TCACTAAAGTCA----
TCTCAAAGGTCACGAG

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TCACTAAAGTCA-
---TCAAGGTCAN

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCACTAAAGTCA
NCCACTTAN----

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TCACTAAAGTCA
NANTTCATTGAATTA-