Information for motif11


Reverse Opposite:

p-value:1e-9
log p-value:-2.197e+01
Information Content per bp:1.515
Number of Target Sequences with motif205.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif564.3
Percentage of Background Sequences with motif1.84%
Average Position of motif in Targets407.2 +/- 330.9bp
Average Position of motif in Background450.4 +/- 409.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTCATTATGG
GTCATN----

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTCATTATGG
-YCATTAMC-

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GTCATTATGG--
GCAACCTCATTATNNNN

PH0151.1_Pou6f1_1/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GTCATTATGG--
NNNACCTCATTATCNTN

PH0073.1_Hoxc9/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTCATTATGG--
GGAGGTCATTAATTAT

MA0095.2_YY1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GTCATTATGG----
--CAAGATGGCGGC

PH0022.1_Dlx3/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GTCATTATGG---
NNNGGTAATTATNGNGN

PH0072.1_Hoxc8/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GTCATTATGG-
TTGGGGTAATTAACGT

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTCATTATGG
GGCCATTAAC-

PH0023.1_Dlx4/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GTCATTATGG---
GTCGGTAATTATNGNGN