Information for motif13


Reverse Opposite:

p-value:1e-9
log p-value:-2.146e+01
Information Content per bp:1.624
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets339.0 +/- 302.5bp
Average Position of motif in Background600.3 +/- 498.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GARAGCTTWCTT
-CAAGCTT----

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GARAGCTTWCTT
ACTGAAACCA-----

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GARAGCTTWCTT-
--NNACTTACCTN

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GARAGCTTWCTT-
------ATACTTA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GARAGCTTWCTT
CTTGAGTGGCT----

PB0126.1_Gata5_2/Jaspar

Match Rank:6
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----GARAGCTTWCTT
NNNCTGATATCTCNNNN

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----GARAGCTTWCTT
GGATTGACAGGTCNTT-

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----GARAGCTTWCTT
NTATTGACAGCTNNTT-

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----GARAGCTTWCTT
GTATTGACAGCTNNTT-

MA0025.1_NFIL3/Jaspar

Match Rank:10
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:GARAGCTTWCTT--
---ANGTTACATAA