Information for motif19


Reverse Opposite:

p-value:1e-6
log p-value:-1.581e+01
Information Content per bp:1.975
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets525.8 +/- 826.2bp
Average Position of motif in Background340.4 +/- 300.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0063.1_Sox13_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGAAGAAGAATT----
TTAAGAACAATAAATT

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGAAGAAGAATT----
NNNNNGAACAATTGANN

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGAAGAAGAATT-
NTTNAGAACAATTA

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAAGAAGAATT----
TTTAGAACAATAAAAT

MA0080.3_Spi1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAAGAAGAATT--
AAAAAGAGGAAGTGA

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGAAGAAGAATT
AAACAGACAAAGGAAT

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGAAGAAGAATT-----
TNNAGAACAATANATNN

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGAAGAAGAATT-----
--ATAAACAATTAAACA

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAAGAAGAATT-----
TAGTGAACAATAGATTT

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGAAGAAGAATT-----
-AATGAACAATGGAATT