Information for motif20


Reverse Opposite:

p-value:1e-6
log p-value:-1.475e+01
Information Content per bp:1.645
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif76.3
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets334.1 +/- 231.9bp
Average Position of motif in Background527.2 +/- 492.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GWTCACCTCTTK
--TGACCT----

MA0071.1_RORA_1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GWTCACCTCTTK
--TGACCTTGAT

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GWTCACCTCTTK--
NNNGTGACCTTTGNNN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GWTCACCTCTTK--
NNNNTGACCTTTNNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GWTCACCTCTTK--
NNNNTTGACCCCTNNNN

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GWTCACCTCTTK--
TGTCGTGACCCCTTAAT

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GWTCACCTCTTK--
NNANTTGACCCCTNNNN

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GWTCACCTCTTK
NNACTTACCTN---

MA0160.1_NR4A2/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GWTCACCTCTTK
-GTGACCTT---

MA0072.1_RORA_2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GWTCACCTCTTK---
-TTGACCTANTTATN