Information for motif27


Reverse Opposite:

p-value:1e-5
log p-value:-1.198e+01
Information Content per bp:1.898
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif94.5
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets360.1 +/- 324.8bp
Average Position of motif in Background364.6 +/- 325.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AKTCACTCTA-
AGCCACTCAAG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AKTCACTCTA
AASCACTCAA

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AKTCACTCTA-
-ATCACCCCAT

MA0067.1_Pax2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AKTCACTCTA
AGTCACGC--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AKTCACTCTA-
-RSCACTYRAG

MA0595.1_SREBF1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AKTCACTCTA-
-ATCACCCCAC

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AKTCACTCTA-
CNGTCACGCCAC

MA0596.1_SREBF2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AKTCACTCTA-
-ATCACCCCAT

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AKTCACTCTA
NCTGTCAATCAN

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AKTCACTCTA
-NCCACTTAN