Information for motif28


Reverse Opposite:

p-value:1e-5
log p-value:-1.169e+01
Information Content per bp:1.505
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif201.0
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets499.1 +/- 508.7bp
Average Position of motif in Background531.9 +/- 435.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ARCYCAYMAC-----
ATGTCACAACAACAC

MA0027.1_En1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ARCYCAYMAC--
-GANCACTACTT

PB0122.1_Foxk1_2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ARCYCAYMAC----
CAAACAACAACACCT

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ARCYCAYMAC------
AACACCAAAACAAAGGA

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ARCYCAYMAC
AAACCACANN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:ARCYCAYMAC----
--NWAACCACADNN

MA0130.1_ZNF354C/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:ARCYCAYMAC
----ATCCAC

PB0123.1_Foxl1_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:ARCYCAYMAC------
ATATCAAAACAAAACA

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:ARCYCAYMAC---
---AAACCACAGC

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:ARCYCAYMAC----
--ACCACATCCTGT