Information for motif33


Reverse Opposite:

p-value:1e-3
log p-value:-8.707e+00
Information Content per bp:1.648
Number of Target Sequences with motif688.0
Percentage of Target Sequences with motif9.81%
Number of Background Sequences with motif2630.4
Percentage of Background Sequences with motif8.58%
Average Position of motif in Targets391.9 +/- 396.4bp
Average Position of motif in Background444.1 +/- 425.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0052.2_MEF2A/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTACTCATAG--
NNGCTATTTTTAGCN

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTACTCATAG
CTATTTTTGG

MA0122.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTACTCATAG
NCCACTTAN--

MA0033.1_FOXL1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTACTCATAG
-TATACATA-

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTACTCATAG-
KCTATTTTTRGH

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTACTCATAG
---GTCATN-

MA0124.1_NKX3-1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTACTCATAG
ATACTTA---

PB0155.1_Osr2_2/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CTACTCATAG-
ACTTGCTACCTACACC

MA0497.1_MEF2C/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTACTCATAG---
TTCTATTTTTAGNNN

PB0114.1_Egr1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------CTACTCATAG
NNAGTCCCACTCNNNN