Information for motif35


Reverse Opposite:

p-value:1e-3
log p-value:-8.214e+00
Information Content per bp:1.818
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets262.0 +/- 233.1bp
Average Position of motif in Background592.7 +/- 321.8bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACCCCGGGACAC
TCACCTCTGGGCAG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ACCCCGGGACAC
--CCAGGAACAG

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACCCCGGGACAC
ACCACGTGAC--

MA0074.1_RXRA::VDR/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACCCCGGGACAC
TGAACCCGATGACCC

MA0093.2_USF1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ACCCCGGGACAC
GCCACGTGACC-

MA0067.1_Pax2/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ACCCCGGGACAC
---NCGTGACN-

Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACCCCGGGACAC--
TGACCCAGTGACCTAC

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACCCCGGGACAC
TCCCNNGGGACN-

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACCCCGGGACAC---
CGCGCCGGGTCACGTA

MA0155.1_INSM1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ACCCCGGGACAC
CGCCCCCTGACA-