Information for motif38


Reverse Opposite:

p-value:1e-2
log p-value:-5.986e+00
Information Content per bp:1.976
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets136.4 +/- 75.8bp
Average Position of motif in Background176.8 +/- 139.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCTGGGAACTGA
CSTGGGAAAD--

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCTGGGAACTGA---
---CGGAAGTGAAAC

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGGGAACTGA
RGSMTBCTGGGAAAT--

MA0144.2_STAT3/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCTGGGAACTGA
CTTCTGGGAAA---

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGGAACTGA
TTCTTGGAAAN--

PB0115.1_Ehf_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGGAACTGA--
AAGATCGGAANTNNNA

GFY(?)/Promoter/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCTGGGAACTGA---
---GGGAATTGTAGT

GFY-Staf/Promoters/Homer

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCTGGGAACTGA----
GCATTCTGGGAATTGTAGTT

MA0510.1_RFX5/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCTGGGAACTGA
CTCCCTGGCAACAGC

MA0518.1_Stat4/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCTGGGAACTGA
TTTCCAGGAAATGG