Information for motif39


Reverse Opposite:

p-value:1e-1
log p-value:-2.359e+00
Information Content per bp:1.950
Number of Target Sequences with motif514.0
Percentage of Target Sequences with motif7.33%
Number of Background Sequences with motif2122.2
Percentage of Background Sequences with motif6.92%
Average Position of motif in Targets388.5 +/- 365.9bp
Average Position of motif in Background459.5 +/- 440.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AATAGAAA--
AATGGAAAAT

PB0033.1_Irf3_1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AATAGAAA---
GAGAACCGAAACTG

MA0517.1_STAT2::STAT1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATAGAAA----
GGAAANTGAAACTNA

PB0037.1_Isgf3g_1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AATAGAAA----
CAAAATCGAAACTAA

MA0497.1_MEF2C/Jaspar

Match Rank:5
Score:0.68
Offset:-8
Orientation:forward strand
Alignment:--------AATAGAAA
ATGCTAAAAATAGAA-

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AATAGAAA
CCAAAAATAG---

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----AATAGAAA---
AACCCAATAAAATTCG

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----AATAGAAA---
CTACCAATAAAATTCT

ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATAGAAA--
GAAACTGAAACT

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATAGAAA--
GAAASYGAAASY