Information for motif4


Reverse Opposite:

p-value:1e-10
log p-value:-2.370e+01
Information Content per bp:1.832
Number of Target Sequences with motif179.0
Percentage of Target Sequences with motif2.55%
Number of Background Sequences with motif464.6
Percentage of Background Sequences with motif1.52%
Average Position of motif in Targets444.8 +/- 394.0bp
Average Position of motif in Background490.0 +/- 456.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GATGTTAATG-
---GKTAATGR

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GATGTTAATG---
---GTTAATGGCC

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GATGTTAATG
AGGTGTTAAT-

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GATGTTAATG------
NNAATTAATGACCNNN

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GATGTTAATG---
TTGTATGCAAATTAGA

PH0158.1_Rhox11_2/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GATGTTAATG--
AGGACGCTGTAAAGGGA

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GATGTTAATG---
TTGTATGCAAATTAGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GATGTTAATG--
AAGACGCTGTAAAGCGA

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GATGTTAATG
TTATGCAAAT-

MA0151.1_ARID3A/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GATGTTAATG
---TTTAAT-