Information for motif40


Reverse Opposite:

p-value:1e0
log p-value:-1.890e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.03%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets660.1 +/- 305.8bp
Average Position of motif in Background341.2 +/- 301.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)12.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGTTGAGATTGG
-GCAGTGATTT-

MA0483.1_Gfi1b/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGTTGAGATTGG
TGCTGTGATTT-

MA0060.2_NFYA/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTTGAGATTGG----
AGAGTGCTGATTGGTCCA

MA0038.1_Gfi1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGTTGAGATTGG
--CNGTGATTTN

NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGTTGAGATTGG--
NNTGTTTATTTTGGCA

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGTTGAGATTGG--
----CCGATTGGCT

MA0502.1_NFYB/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGTTGAGATTGG-------
----CTGATTGGTCNATTT

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGTTGAGATTGG-----
-----TGATTGGCTANN

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AGTTGAGATTGG
ATAACCACTTGAAAATT-

MA0592.1_ESRRA/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGTTGAGATTGG
-NGTGACCTTGG