Information for motif6


Reverse Opposite:

p-value:1e-9
log p-value:-2.277e+01
Information Content per bp:1.928
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.30%
Number of Background Sequences with motif15.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets276.2 +/- 260.0bp
Average Position of motif in Background479.1 +/- 365.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0052.2_MEF2A/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CTATAAATAACT-
AGCTAAAAATAGCAT

MA0485.1_Hoxc9/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CTATAAATAACT
GGCCATAAATCAC-

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTATAAATAACT
DCYAAAAATAGM-

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTATAAATAACT
GGCCATAAATCA--

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTATAAATAACT---
GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTATAAATAACT---
GTATAAAAGGCGGGG

PB0080.1_Tbp_1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTATAAATAACT-
TCTTTATATATAAATA

MA0594.1_Hoxa9/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTATAAATAACT
GCCATAAATCA--

MA0497.1_MEF2C/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTATAAATAACT
ATGCTAAAAATAGAA

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTATAAATAACT
GGCCATAAATCA--