Information for motif8


Reverse Opposite:

p-value:1e-9
log p-value:-2.228e+01
Information Content per bp:1.509
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets364.5 +/- 317.0bp
Average Position of motif in Background849.8 +/- 438.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CGTATATTGTCA
--CTCATTGTC-

MA0029.1_Mecom/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGTATATTGTCA-
TNTTATCTTATCTT

PB0074.1_Sox8_1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGTATATTGTCA----
GTATCTATTGTTCTTTA

MA0084.1_SRY/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CGTATATTGTCA--
-----ATTGTTTAN

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGTATATTGTCA-----
CNNNTATTGTTCNNNNN

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CGTATATTGTCA
-----ATTGTT-

MA0087.1_Sox5/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CGTATATTGTCA
-----ATTGTTA

PB0002.1_Arid5a_1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGTATATTGTCA--
CTAATATTGCTAAA

PB0072.1_Sox5_1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGTATATTGTCA----
NNTTTATTGTTCTNNN

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGTATATTGTCA----
--AAAATTGTTATGAA