Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6897)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 30500)	% of Background Sequences with Motif
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-6.114e+00	0.5443	20.0	0.29%	42.7	0.14%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-2.883e+00	1.0000	1601.0	22.83%	6754.5	22.03%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-2.856e+00	1.0000	220.0	3.14%	864.0	2.82%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.629e+00	1.0000	2095.0	29.87%	8912.5	29.07%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.143e+00	1.0000	3308.0	47.16%	14240.7	46.45%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.978e+00	1.0000	456.0	6.50%	1895.2	6.18%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.942e+00	1.0000	3241.0	46.21%	13970.7	45.57%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.706e+00	1.0000	3150.0	44.91%	13601.9	44.37%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.596e+00	1.0000	45.0	0.64%	172.2	0.56%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.493e+00	1.0000	146.0	2.08%	598.7	1.95%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.223e+00	1.0000	1127.0	16.07%	4852.9	15.83%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.162e+00	1.0000	165.0	2.35%	693.3	2.26%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.162e+00	1.0000	165.0	2.35%	693.3	2.26%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.122e+00	1.0000	376.0	5.36%	1605.4	5.24%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.052e+00	1.0000	351.0	5.00%	1502.5	4.90%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.040e+00	1.0000	47.0	0.67%	193.6	0.63%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.013e+00	1.0000	32.0	0.46%	130.9	0.43%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-9.542e-01	1.0000	119.0	1.70%	505.1	1.65%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.100e-01	1.0000	34.0	0.48%	141.4	0.46%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-7.493e-01	1.0000	24.0	0.34%	102.8	0.34%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.151e-01	1.0000	107.0	1.53%	465.5	1.52%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.687e-01	1.0000	380.0	5.42%	1662.1	5.42%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.614e-01	1.0000	13.0	0.19%	56.3	0.18%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.583e-01	1.0000	23.0	0.33%	100.7	0.33%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.858e-01	1.0000	128.0	1.82%	565.9	1.85%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-5.776e-01	1.0000	517.0	7.37%	2273.1	7.41%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.740e-01	1.0000	111.0	1.58%	491.3	1.60%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.503e-01	1.0000	71.0	1.01%	316.7	1.03%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-4.589e-01	1.0000	145.0	2.07%	650.3	2.12%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.151e-01	1.0000	301.0	4.29%	1345.1	4.39%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-3.792e-01	1.0000	2098.0	29.91%	9249.5	30.17%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.781e-01	1.0000	1243.0	17.72%	5499.5	17.94%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-3.552e-01	1.0000	1546.0	22.04%	6836.5	22.30%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.484e-01	1.0000	141.0	2.01%	644.0	2.10%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.382e-01	1.0000	160.0	2.28%	729.9	2.38%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.319e-01	1.0000	1172.0	16.71%	5200.9	16.96%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.298e-01	1.0000	53.0	0.76%	249.8	0.81%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-3.119e-01	1.0000	147.0	2.10%	674.9	2.20%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-3.116e-01	1.0000	1771.0	25.25%	7838.6	25.57%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.014e-01	1.0000	161.0	2.30%	738.6	2.41%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.792e-01	1.0000	157.0	2.24%	723.0	2.36%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.707e-01	1.0000	2416.0	34.45%	10683.9	34.85%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.612e-01	1.0000	197.0	2.81%	905.4	2.95%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.595e-01	1.0000	2834.0	40.40%	12519.4	40.84%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.426e-01	1.0000	825.0	11.76%	3698.7	12.06%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-2.424e-01	1.0000	110.0	1.57%	516.9	1.69%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.416e-01	1.0000	884.0	12.60%	3959.2	12.91%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.315e-01	1.0000	187.0	2.67%	865.5	2.82%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.245e-01	1.0000	307.0	4.38%	1404.1	4.58%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.238e-01	1.0000	229.0	3.26%	1055.5	3.44%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.129e-01	1.0000	977.0	13.93%	4380.6	14.29%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.036e-01	1.0000	575.0	8.20%	2603.2	8.49%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.026e-01	1.0000	326.0	4.65%	1494.2	4.87%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.969e-01	1.0000	2011.0	28.67%	8941.4	29.17%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.943e-01	1.0000	816.0	11.63%	3675.7	11.99%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.809e-01	1.0000	130.0	1.85%	616.5	2.01%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.773e-01	1.0000	589.0	8.40%	2674.6	8.72%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.716e-01	1.0000	481.0	6.86%	2195.3	7.16%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.701e-01	1.0000	238.0	3.39%	1107.6	3.61%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.624e-01	1.0000	296.0	4.22%	1370.4	4.47%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.575e-01	1.0000	529.0	7.54%	2415.0	7.88%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.551e-01	1.0000	221.0	3.15%	1034.9	3.38%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.430e-01	1.0000	140.0	2.00%	669.6	2.18%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.297e-01	1.0000	306.0	4.36%	1425.6	4.65%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.290e-01	1.0000	2433.0	34.69%	10837.7	35.35%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.282e-01	1.0000	243.0	3.46%	1141.8	3.72%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.271e-01	1.0000	151.0	2.15%	723.3	2.36%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.249e-01	1.0000	1070.0	15.26%	4833.4	15.77%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.249e-01	1.0000	226.0	3.22%	1065.3	3.47%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.187e-01	1.0000	394.0	5.62%	1825.3	5.95%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.160e-01	1.0000	947.0	13.50%	4293.0	14.00%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.113e-01	1.0000	1704.0	24.29%	7644.1	24.93%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.098e-01	1.0000	296.0	4.22%	1387.7	4.53%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.047e-01	1.0000	182.0	2.59%	871.7	2.84%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.021e-01	1.0000	354.0	5.05%	1652.6	5.39%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.001e-01	1.0000	1330.0	18.96%	6001.9	19.58%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.000e-01	1.0000	1035.0	14.76%	4694.8	15.31%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.094e-02	1.0000	383.0	5.46%	1788.2	5.83%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.970e-02	1.0000	704.0	10.04%	3235.3	10.55%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.414e-02	1.0000	130.0	1.85%	642.1	2.09%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.339e-02	1.0000	279.0	3.98%	1326.9	4.33%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.074e-02	1.0000	951.0	13.56%	4344.8	14.17%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.939e-02	1.0000	443.0	6.32%	2071.8	6.76%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.729e-02	1.0000	28.0	0.40%	159.8	0.52%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-6.629e-02	1.0000	34.0	0.48%	189.6	0.62%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.430e-02	1.0000	3004.0	42.83%	13408.0	43.73%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.202e-02	1.0000	300.0	4.28%	1428.5	4.66%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-5.810e-02	1.0000	547.0	7.80%	2548.7	8.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-5.786e-02	1.0000	648.0	9.24%	3002.8	9.79%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.720e-02	1.0000	60.0	0.86%	319.0	1.04%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.529e-02	1.0000	144.0	2.05%	715.8	2.33%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-5.412e-02	1.0000	564.0	8.04%	2628.9	8.57%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.217e-02	1.0000	292.0	4.16%	1398.6	4.56%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.099e-02	1.0000	447.0	6.37%	2103.4	6.86%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.049e-02	1.0000	187.0	2.67%	917.5	2.99%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.986e-02	1.0000	558.0	7.96%	2605.8	8.50%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.965e-02	1.0000	183.0	2.61%	899.7	2.93%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.694e-02	1.0000	822.0	11.72%	3793.3	12.37%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-4.601e-02	1.0000	298.0	4.25%	1430.6	4.67%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.483e-02	1.0000	680.0	9.69%	3159.7	10.31%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.445e-02	1.0000	997.0	14.21%	4578.0	14.93%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.243e-02	1.0000	286.0	4.08%	1378.3	4.50%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-4.172e-02	1.0000	777.0	11.08%	3598.0	11.74%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.825e-02	1.0000	596.0	8.50%	2789.2	9.10%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.584e-02	1.0000	90.0	1.28%	471.7	1.54%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.555e-02	1.0000	739.0	10.54%	3436.3	11.21%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.215e-02	1.0000	368.0	5.25%	1763.1	5.75%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.134e-02	1.0000	1562.0	22.27%	7113.8	23.20%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.811e-02	1.0000	504.0	7.19%	2387.8	7.79%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.398e-02	1.0000	1023.0	14.59%	4730.5	15.43%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.349e-02	1.0000	1253.0	17.86%	5758.7	18.78%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.258e-02	1.0000	180.0	2.57%	907.0	2.96%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.256e-02	1.0000	1056.0	15.06%	4881.1	15.92%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.214e-02	1.0000	663.0	9.45%	3117.6	10.17%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.046e-02	1.0000	162.0	2.31%	825.1	2.69%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.037e-02	1.0000	874.0	12.46%	4072.0	13.28%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.979e-02	1.0000	1476.0	21.04%	6761.2	22.05%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.836e-02	1.0000	108.0	1.54%	571.7	1.86%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.750e-02	1.0000	704.0	10.04%	3313.9	10.81%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.734e-02	1.0000	2152.0	30.68%	9764.7	31.85%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.529e-02	1.0000	1110.0	15.83%	5144.6	16.78%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.519e-02	1.0000	484.0	6.90%	2321.8	7.57%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.473e-02	1.0000	784.0	11.18%	3683.0	12.01%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.388e-02	1.0000	631.0	9.00%	2993.2	9.76%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.353e-02	1.0000	1320.0	18.82%	6089.3	19.86%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.308e-02	1.0000	836.0	11.92%	3922.3	12.79%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.157e-02	1.0000	1449.0	20.66%	6674.0	21.77%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.141e-02	1.0000	486.0	6.93%	2341.5	7.64%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.102e-02	1.0000	149.0	2.12%	778.2	2.54%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.100e-02	1.0000	76.0	1.08%	425.6	1.39%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.077e-02	1.0000	785.0	11.19%	3701.8	12.07%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-9.462e-03	1.0000	681.0	9.71%	3236.8	10.56%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.882e-03	1.0000	294.0	4.19%	1465.2	4.78%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.306e-03	1.0000	344.0	4.90%	1703.6	5.56%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-6.484e-03	1.0000	1223.0	17.44%	5695.2	18.58%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.303e-03	1.0000	962.0	13.72%	4524.0	14.76%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-6.108e-03	1.0000	806.0	11.49%	3821.6	12.47%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.711e-03	1.0000	302.0	4.31%	1515.1	4.94%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-5.547e-03	1.0000	1482.0	21.13%	6861.5	22.38%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.109e-03	1.0000	1190.0	16.97%	5559.6	18.13%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.845e-03	1.0000	1069.0	15.24%	5018.9	16.37%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.791e-03	1.0000	346.0	4.93%	1725.1	5.63%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.785e-03	1.0000	159.0	2.27%	844.2	2.75%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.485e-03	1.0000	412.0	5.87%	2033.5	6.63%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.222e-03	1.0000	1345.0	19.18%	6263.7	20.43%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.794e-03	1.0000	1623.0	23.14%	7510.5	24.50%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.340e-03	1.0000	934.0	13.32%	4426.8	14.44%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.957e-03	1.0000	499.0	7.11%	2448.1	7.99%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.898e-03	1.0000	1601.0	22.83%	7426.9	24.22%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.891e-03	1.0000	688.0	9.81%	3315.2	10.81%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.620e-03	1.0000	211.0	3.01%	1106.9	3.61%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.515e-03	1.0000	670.0	9.55%	3238.2	10.56%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.354e-03	1.0000	377.0	5.37%	1890.8	6.17%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.083e-03	1.0000	1371.0	19.55%	6414.8	20.92%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.949e-03	1.0000	1740.0	24.81%	8066.3	26.31%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.884e-03	1.0000	2754.0	39.26%	12556.6	40.96%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.724e-03	1.0000	4793.0	68.33%	21441.5	69.94%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.563e-03	1.0000	3774.0	53.81%	17033.0	55.56%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.554e-03	1.0000	177.0	2.52%	954.6	3.11%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.456e-03	1.0000	482.0	6.87%	2392.0	7.80%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.422e-03	1.0000	431.0	6.14%	2156.1	7.03%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.390e-03	1.0000	1839.0	26.22%	8524.6	27.81%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.386e-03	1.0000	221.0	3.15%	1168.9	3.81%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.364e-03	1.0000	1388.0	19.79%	6510.8	21.24%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.297e-03	1.0000	354.0	5.05%	1799.3	5.87%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.279e-03	1.0000	1651.0	23.54%	7690.8	25.09%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.244e-03	1.0000	1529.0	21.80%	7147.0	23.31%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.194e-03	1.0000	1250.0	17.82%	5896.2	19.23%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.187e-03	1.0000	1495.0	21.31%	6996.6	22.82%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.134e-03	1.0000	1613.0	23.00%	7526.3	24.55%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-9.930e-04	1.0000	1306.0	18.62%	6156.1	20.08%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-9.450e-04	1.0000	961.0	13.70%	4600.1	15.00%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.620e-04	1.0000	296.0	4.22%	1536.7	5.01%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.520e-04	1.0000	952.0	13.57%	4568.0	14.90%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.280e-04	1.0000	904.0	12.89%	4351.6	14.19%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.940e-04	1.0000	1745.0	24.88%	8146.7	26.57%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.970e-04	1.0000	949.0	13.53%	4571.0	14.91%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.940e-04	1.0000	916.0	13.06%	4420.3	14.42%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.370e-04	1.0000	665.0	9.48%	3275.1	10.68%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-3.480e-04	1.0000	1341.0	19.12%	6358.8	20.74%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.280e-04	1.0000	1548.0	22.07%	7291.7	23.78%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.790e-04	1.0000	1534.0	21.87%	7235.6	23.60%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.760e-04	1.0000	757.0	10.79%	3713.9	12.11%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.620e-04	1.0000	1054.0	15.03%	5072.0	16.54%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.210e-04	1.0000	2006.0	28.60%	9356.0	30.52%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.110e-04	1.0000	464.0	6.62%	2363.3	7.71%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.080e-04	1.0000	1869.0	26.65%	8747.2	28.53%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.880e-04	1.0000	1357.0	19.35%	6455.4	21.06%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.860e-04	1.0000	3186.0	45.42%	14574.2	47.54%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.840e-04	1.0000	1065.0	15.18%	5134.1	16.75%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.600e-04	1.0000	1161.0	16.55%	5575.6	18.19%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.490e-04	1.0000	1636.0	23.32%	7719.0	25.18%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.420e-04	1.0000	546.0	7.78%	2757.2	8.99%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.250e-04	1.0000	1801.0	25.68%	8465.8	27.61%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.150e-04	1.0000	2570.0	36.64%	11886.8	38.77%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-8.700e-05	1.0000	1093.0	15.58%	5288.6	17.25%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.100e-05	1.0000	2355.0	33.58%	10956.0	35.74%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.400e-05	1.0000	1892.0	26.97%	8907.9	29.06%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.300e-05	1.0000	1114.0	15.88%	5401.2	17.62%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-5.300e-05	1.0000	2411.0	34.37%	11217.0	36.59%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.300e-05	1.0000	615.0	8.77%	3106.3	10.13%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-5.000e-05	1.0000	2836.0	40.43%	13097.5	42.72%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.500e-05	1.0000	1998.0	28.49%	9388.2	30.62%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.400e-05	1.0000	421.0	6.00%	2199.9	7.18%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.300e-05	1.0000	1783.0	25.42%	8439.0	27.53%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.100e-05	1.0000	1296.0	18.48%	6247.6	20.38%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.900e-05	1.0000	780.0	11.12%	3889.8	12.69%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.700e-05	1.0000	1808.0	25.78%	8558.1	27.91%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.700e-05	1.0000	594.0	8.47%	3026.4	9.87%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.600e-05	1.0000	2604.0	37.13%	12122.7	39.54%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.100e-05	1.0000	3334.0	47.53%	15347.0	50.06%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.100e-05	1.0000	1634.0	23.30%	7810.4	25.48%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-8.000e-06	1.0000	2094.0	29.85%	9883.6	32.24%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.000e-06	1.0000	2176.0	31.02%	10249.7	33.43%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.000e-06	1.0000	46.0	0.66%	357.3	1.17%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.000e-06	1.0000	1609.0	22.94%	7719.8	25.18%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.000e-06	1.0000	2149.0	30.64%	10146.8	33.10%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.000e-06	1.0000	547.0	7.80%	2849.8	9.30%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.000e-06	1.0000	1759.0	25.08%	8406.7	27.42%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.000e-06	1.0000	2425.0	34.57%	11402.5	37.19%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.000e-06	1.0000	2192.0	31.25%	10373.5	33.84%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.000e-06	1.0000	1430.0	20.39%	6950.2	22.67%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.000e-06	1.0000	2140.0	30.51%	10155.0	33.12%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.000e-06	1.0000	665.0	9.48%	3445.3	11.24%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.000e-06	1.0000	4628.0	65.98%	21061.8	68.70%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-0.000e+00	1.0000	1983.0	28.27%	9494.0	30.97%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-0.000e+00	1.0000	2130.0	30.37%	10158.6	33.14%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-0.000e+00	1.0000	1344.0	19.16%	6649.7	21.69%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-0.000e+00	1.0000	771.0	10.99%	3997.1	13.04%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	2387.0	34.03%	11354.3	37.04%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-0.000e+00	1.0000	3468.0	49.44%	16117.2	52.57%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	2941.0	41.93%	13816.4	45.07%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	3777.0	53.85%	17487.4	57.04%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	4779.0	68.14%	21799.6	71.11%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	3416.0	48.70%	15941.4	52.00%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	2139.0	30.50%	10298.9	33.59%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	2014.0	28.71%	9740.5	31.77%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	2319.0	33.06%	11120.5	36.27%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-0.000e+00	1.0000	2959.0	42.19%	13988.8	45.63%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	3583.0	51.08%	16732.6	54.58%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-0.000e+00	1.0000	2906.0	41.43%	13834.5	45.13%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	2597.0	37.03%	12480.0	40.71%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	3996.0	56.97%	18600.0	60.67%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	3045.0	43.41%	14472.3	47.21%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	437.0	6.23%	3082.3	10.05%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	388.0	5.53%	2971.8	9.69%