Information for motif12


Reverse Opposite:

p-value:1e-11
log p-value:-2.611e+01
Information Content per bp:1.879
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets351.4 +/- 285.2bp
Average Position of motif in Background57.4 +/- 55.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:GCGGTGACAAAG
------ACAAAG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GCGGTGACAAAG-
-----RACAAWGG

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCGGTGACAAAG-
---AAAACAAAGG

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCGGTGACAAAG----
AAACAGACAAAGGAAT

MA0143.3_Sox2/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GCGGTGACAAAG-
-----AACAAAGG

MA0515.1_Sox6/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCGGTGACAAAG-
---AAAACAATGG

PB0158.1_Rfx3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCGGTGACAAAG-------
NNTNGNNGTAACCAAGNNNNAGN

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCGGTGACAAAG
GGTGYTGACAGS-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCGGTGACAAAG-
---RNAACAATGG

MA0067.1_Pax2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCGGTGACAAAG
-NCGTGACN---