Information for motif18


Reverse Opposite:

p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.848
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif14.5
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets475.0 +/- 506.6bp
Average Position of motif in Background758.2 +/- 984.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGCACTACA-----
AATCGCACTGCATTCCG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGCACTACA
AASCACTCAA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGGCACTACA-
-RSCACTYRAG

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGCACTACA-
AGCCACTCAAG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCACTACA
AAGCACTTAA

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGGCACTACA----
TAAGCCACTTGAAATT

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGGCACTACA----
CGAAGCACACAAAATA

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGGCACTACA-
-ATCACCCCAT

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGGCACTACA----
TAAGCCACTTGAAATT

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGGCACTACA
CACGCA-----