Information for motif2


Reverse Opposite:

p-value:1e-20
log p-value:-4.670e+01
Information Content per bp:1.864
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets375.8 +/- 420.7bp
Average Position of motif in Background309.1 +/- 201.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TACAAAGGGCAT
--CAAAGGTCAG

MA0512.1_Rxra/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TACAAAGGGCAT-
--CAAAGGTCAGA

MA0484.1_HNF4G/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TACAAAGGGCAT
AGAGTCCAAAGTCCA-

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TACAAAGGGCAT
AACAAAGG----

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TACAAAGGGCAT
RACAAWGG----

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TACAAAGGGCAT
AAAACAAAGG----

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TACAAAGGGCAT---
TCTCAAAGGTCACCTG

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TACAAAGGGCAT---
TCTCAAAGGTCACGAG

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TACAAAGGGCAT
CANAGNNCAAAGTCCA-

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TACAAAGGGCAT-
NNTNNACAATGGGANNN