Information for motif24


Reverse Opposite:

p-value:1e-8
log p-value:-1.885e+01
Information Content per bp:1.467
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets352.5 +/- 332.0bp
Average Position of motif in Background618.9 +/- 450.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:1
Score:0.81
Offset:3
Orientation:forward strand
Alignment:GGTGCCACRTGA-
---KCCACGTGAC

MA0104.3_Mycn/Jaspar

Match Rank:2
Score:0.79
Offset:3
Orientation:forward strand
Alignment:GGTGCCACRTGA
---GCCACGTG-

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:3
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:GGTGCCACRTGA-
---ACCACGTGAC

MA0093.2_USF1/Jaspar

Match Rank:4
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GGTGCCACRTGA--
---GCCACGTGACC

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GGTGCCACRTGA
--GGTCACGTGA

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.76
Offset:3
Orientation:forward strand
Alignment:GGTGCCACRTGA
---GNCACGTG-

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:7
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GGTGCCACRTGA
---NCCACGTG-

MA0526.1_USF2/Jaspar

Match Rank:8
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GGTGCCACRTGA--
---GTCATGTGACC

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GGTGCCACRTGA
---GHCACGTG-

Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GGTGCCACRTGA---
---ACCACGTGGTNN