Information for motif25


Reverse Opposite:

p-value:1e-7
log p-value:-1.813e+01
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets357.0 +/- 293.5bp
Average Position of motif in Background110.5 +/- 76.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0158.1_HOXA5/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:ACACTAATGC
-CACTAATT-

MA0132.1_Pdx1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:ACACTAATGC
---CTAATT-

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACACTAATGC-----
AATCGTTAATCCCTTTA

PH0025.1_Dmbx1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ACACTAATGC------
NNNATTAATCCGNTTNA

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:ACACTAATGC--
----TAATCCCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ACACTAATGC
--GCTAATCC

MA0467.1_Crx/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:ACACTAATGC----
---CTAATCCTCTT

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACACTAATGC-----
GNNNATTAATCCCTNCN

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ACACTAATGC
NCCACTTAN--

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACACTAATGC-----
NNNAATTAATCCCCNCN