Information for motif27


Reverse Opposite:

p-value:1e-7
log p-value:-1.628e+01
Information Content per bp:1.964
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets345.2 +/- 331.5bp
Average Position of motif in Background475.1 +/- 355.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0024.1_Gcm1_1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AGATGCAGGT----
NNNNATGCGGGTNNNN

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AGATGCAGGT---
---NNCAGGTGNN

MA0103.2_ZEB1/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:AGATGCAGGT----
-----CAGGTGAGG

MA0522.1_Tcf3/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGATGCAGGT---
--NTGCAGCTGTG

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGATGCAGGT-------
ATCCACAGGTGCGAAAA

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGATGCAGGT
ACATCCTGNT

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGATGCAGGT
ATATGCAAAT

MA0071.1_RORA_1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGATGCAGGT--
--ATCAAGGTCA

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGATGCAGGT--
-AAGGCAAGTGT

MA0507.1_POU2F2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGATGCAGGT---
ATATGCAAATNNN