Information for motif3


Reverse Opposite:

p-value:1e-20
log p-value:-4.647e+01
Information Content per bp:1.824
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets292.8 +/- 200.7bp
Average Position of motif in Background687.7 +/- 191.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.45
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGGTGTACMCTG
GCGGAGGTGTCGCCTC

PB0094.1_Zfp128_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGTGTACMCTG-
TCTTTGGCGTACCCTAA

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGGTGTACMCTG
NNCAGGTGNN-----

PB0156.1_Plagl1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGGTGTACMCTG-
GCTGGGGGGTACCCCTT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGTGTACMCTG
AGGTGTCA----

MA0103.2_ZEB1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGTACMCTG
CAGGTGAGG----

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGGTGTACMCTG
ATCCACAGGTGCGAAAA-

PB0104.1_Zscan4_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----AGGTGTACMCTG-
NTNTATGTGCACATNNN

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGGTGTACMCTG
AGGTGTGAAM--

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGGTGTACMCTG
--CTGTTCCTGG