Information for motif34


Reverse Opposite:

p-value:1e-4
log p-value:-1.125e+01
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets291.1 +/- 232.4bp
Average Position of motif in Background863.8 +/- 515.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ATCTTTATAG
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ATCTTTATAG
NNNNNNCTTTTATAN

MA0465.1_CDX2/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATCTTTATAG---
--TTTTATGGCTN

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTTATAG----
NNANTTTTATTGGNNN

MA0040.1_Foxq1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATCTTTATAG
TATTGTTTATT-

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTTATAG----
NNAATTTTATTGGNTN

PB0198.1_Zfp128_2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATCTTTATAG-
TGTATATATATACC

MA0052.2_MEF2A/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATCTTTATAG--
NNGCTATTTTTAGCN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATCTTTATAG--
--TTTTATTRGN

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATCTTTATAG--
--TTTAATTGCN