Information for motif39


Reverse Opposite:

p-value:1e-1
log p-value:-3.810e+00
Information Content per bp:1.881
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif17.4
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets260.1 +/- 208.0bp
Average Position of motif in Background510.8 +/- 346.0bp
Strand Bias (log2 ratio + to - strand density)2.9
Multiplicity (# of sites on avg that occur together)2.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ACCGTATATA------
ANNNGGATATATCCNNN

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ACCGTATATA-
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ACCGTATATA-
NNNNNNCTTTTATAN

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ACCGTATATA------
TCTTTATATATAAATA

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ACCGTATATA-
-CCATATATGG

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ACCGTATATA---
-CCTTTTATAGNC

MA0033.1_FOXL1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ACCGTATATA--
----TATGTNTA

MA0109.1_Hltf/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACCGTATATA
AACCTTATAT-

PB0078.1_Srf_1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACCGTATATA---
TTCCATATATGGAA

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACCGTATATA---
-CCATATATGGNA