Information for motif41


Reverse Opposite:

p-value:1e0
log p-value:-3.520e-02
Information Content per bp:1.703
Number of Target Sequences with motif283.0
Percentage of Target Sequences with motif4.04%
Number of Background Sequences with motif370.4
Percentage of Background Sequences with motif4.48%
Average Position of motif in Targets450.4 +/- 434.2bp
Average Position of motif in Background504.9 +/- 406.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTTTTCT---
NNNNTTTTTTTTTNAAC

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TTTTTTTTCT----
TTTTTTTTCNNGTN

PB0093.1_Zfp105_1/Jaspar

Match Rank:3
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTTTTCT-
NTNTTGTTGTTTGTN

PB0116.1_Elf3_2/Jaspar

Match Rank:4
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTTTTTCT--
GNATTTTTTTTTTGANC

MA0465.1_CDX2/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTTTTTTTCT-
TTTTATGGCTN

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTTTTCT--
NNANTTTTATTGGNNN

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTTTTCT--
NGANTTTTATGGCTCN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTTTTTTTCT
NTTTTATGAC-

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTTTTCT--
NNAATTTTATTGGNTN

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTTTTTCT
NCNTTTGTTATTTNN