Information for motif42


Reverse Opposite:

p-value:1e0
log p-value:-5.397e-03
Information Content per bp:1.774
Number of Target Sequences with motif477.0
Percentage of Target Sequences with motif6.80%
Number of Background Sequences with motif628.7
Percentage of Background Sequences with motif7.60%
Average Position of motif in Targets422.7 +/- 413.8bp
Average Position of motif in Background515.3 +/- 462.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CATCATTG----
TATCATAATTAAGGA

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CATCATTG--
-CTCATTGTC

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CATCATTG
ATTGCATCAT--

MA0488.1_JUN/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CATCATTG-
ATGACATCATCNN

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CATCATTG
ATTGCATCAK--

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CATCATTG----
TCACCCATCAATAAACA

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CATCATTG----
--CCATTGTTTT

MA0442.1_SOX10/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CATCATTG-
---CTTTGT

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CATCATTG------
--TGATTGGCTANN

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CATCATTG
-GTCATN-