Information for motif1


Reverse Opposite:

p-value:1e-12
log p-value:-2.900e+01
Information Content per bp:1.653
Number of Target Sequences with motif731.0
Percentage of Target Sequences with motif16.32%
Number of Background Sequences with motif3151.1
Percentage of Background Sequences with motif12.59%
Average Position of motif in Targets470.5 +/- 454.9bp
Average Position of motif in Background471.0 +/- 450.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGTAGTCCAAG
GCTGTG-------

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAGTCCAAG----
NSTGTTTRCWCAGBNNN

MA0002.2_RUNX1/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTGTAGTCCAAG
GTCTGTGGTTT---

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTGTAGTCCAAG
CTGTTTAC----

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTGTAGTCCAAG
GCTGTGGTTT---

MA0480.1_Foxo1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CTGTAGTCCAAG
TCCTGTTTACA---

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CTGTAGTCCAAG----
------NTCAAGGTCA

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---CTGTAGTCCAAG-----
NNCCTGNAAAAAAAAAAAAA

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------CTGTAGTCCAAG
AAGACGCTGTAAAGCGA-

PB0047.1_Myf6_1/Jaspar

Match Rank:10
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------CTGTAGTCCAAG
CNGACACCTGTTCNNN---