Information for motif18


Reverse Opposite:

p-value:1e-7
log p-value:-1.686e+01
Information Content per bp:1.649
Number of Target Sequences with motif830.0
Percentage of Target Sequences with motif18.53%
Number of Background Sequences with motif3894.1
Percentage of Background Sequences with motif15.56%
Average Position of motif in Targets565.5 +/- 501.6bp
Average Position of motif in Background566.6 +/- 509.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCACCGTGCC
--AGCGCGCC

MA0088.1_znf143/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CCACCGTGCC----
GATTTCCCATAATGCCTTGC

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCACCGTGCC
ATCCAC------

MA0119.1_TLX1::NFIC/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCACCGTGCC--
TGGCACCATGCCAA

MA0112.2_ESR1/Jaspar

Match Rank:5
Score:0.56
Offset:-8
Orientation:forward strand
Alignment:--------CCACCGTGCC--
GGCCCAGGTCACCCTGACCT

ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCACCGTGCC-
NAGGTCACNNTGACC

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCACCGTGCC
-GGACGTGC-

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCACCGTGCC
ATTTCCCAGVAKSCY

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCACCGTGCC--
-NNACTTGCCTT

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CCACCGTGCC
CATAAGACCACCATTAC