Information for motif2


Reverse Opposite:

p-value:1e-11
log p-value:-2.638e+01
Information Content per bp:1.710
Number of Target Sequences with motif444.0
Percentage of Target Sequences with motif9.91%
Number of Background Sequences with motif1783.7
Percentage of Background Sequences with motif7.13%
Average Position of motif in Targets445.8 +/- 410.2bp
Average Position of motif in Background454.2 +/- 419.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTCTGTATTTTA--
TNNTTTCGTATTNNANN

PH0046.1_Hoxa10/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTCTGTATTTTA-------
---TNAATTTTATTACCTN

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TTCTGTATTTTA-------
---NNANTTTTATTGGNNN

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTCTGTATTTTA-------
--NTNAATTTTATTGNATT

MA0479.1_FOXH1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTCTGTATTTTA
-TGTGGATTNNN

PB0162.1_Sfpi1_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGTATTTTA
GGTTCCNNAATTTG

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TTCTGTATTTTA-----
-------TTTTATTRGN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TTCTGTATTTTA---
---KCTATTTTTRGH

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TTCTGTATTTTA-------
---NGANTTTTATGGCTCN

POL007.1_BREd/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TTCTGTATTTTA
----GTTTGTT-