Information for motif23


Reverse Opposite:

p-value:1e-5
log p-value:-1.335e+01
Information Content per bp:1.912
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets362.4 +/- 183.7bp
Average Position of motif in Background837.9 +/- 594.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.71
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CATTGAGGGCTC------
-GGCGAGGGGTCAAGGGC

PB0025.1_Glis2_1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CATTGAGGGCTC----
NTNTGGGGGGTCNNNA

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CATTGAGGGCTC-----
NTNNNAGGAGTCTCNTN

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CATTGAGGGCTC------
-NTNNNGGGGTCANGNNN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CATTGAGGGCTC
--TTGAGTGSTT

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CATTGAGGGCTC-
NNNNNATTGATGNGTGN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CATTGAGGGCTC
-CTTGAGTGGCT

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CATTGAGGGCTC------
-CTCCAGGGGTCAATTGA

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CATTGAGGGCTC---
GGATTGACAGGTCNTT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CATTGAGGGCTC
--TTAAGTGCTT