Information for motif24


Reverse Opposite:

p-value:1e-5
log p-value:-1.287e+01
Information Content per bp:1.867
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif50.5
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets432.4 +/- 513.9bp
Average Position of motif in Background630.4 +/- 520.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTATGAGACG-
NAATTTTACGAGNTNN

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TTATGAGACG--
GACGATAATGAGCTTGC

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTATGAGACG-
ANATTTTACGAGNNNN

PH0152.1_Pou6f1_2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TTATGAGACG--
AAACATAATGAGGTTGC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTATGAGACG
TTTTATTRGN--

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTATGAGACG
-CATGAC---

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTATGAGACG--
NNTTTANNCGACGNA

PB0098.1_Zfp410_1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TTATGAGACG-----
TATTATGGGATGGATAA

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTATGAGACG--
NNNNTTGTGTGCTTNN

PB0176.1_Sox5_2/Jaspar

Match Rank:10
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------TTATGAGACG
NNCTNAATTATGANN--