Information for motif3


Reverse Opposite:

p-value:1e-11
log p-value:-2.613e+01
Information Content per bp:1.681
Number of Target Sequences with motif460.0
Percentage of Target Sequences with motif10.27%
Number of Background Sequences with motif1863.6
Percentage of Background Sequences with motif7.45%
Average Position of motif in Targets446.1 +/- 451.4bp
Average Position of motif in Background467.4 +/- 450.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0596.1_SREBF2/Jaspar

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGRATCGCTTGA-
---ATGGGGTGAT

MA0595.1_SREBF1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGRATCGCTTGA-
---GTGGGGTGAT

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGRATCGCTTGA-
---ATGGGGTGAT

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGRATCGCTTGA-----
ATAACCACTTGAAAATT

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGRATCGCTTGA-------
GGAAGAGTCACGTGACCAATAC

MA0070.1_PBX1/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGRATCGCTTGA---
---TTTGATTGATGN

MA0067.1_Pax2/Jaspar

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:AGRATCGCTTGA--
------NCGTGACN

PB0144.1_Lef1_2/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGRATCGCTTGA-----
-NNANTGATTGATNTTN

MA0526.1_USF2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGRATCGCTTGA-
--GGTCACATGAC

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGRATCGCTTGA-----
-NNANTGATTGATNNNN